diff --git a/.clangd b/.clangd new file mode 100644 index 0000000..ec0b890 --- /dev/null +++ b/.clangd @@ -0,0 +1,2 @@ +CompileFlags: + CompilationDatabase: build diff --git a/.gitignore b/.gitignore index 6d7ee76..bf17354 100644 --- a/.gitignore +++ b/.gitignore @@ -1,10 +1,11 @@ -.ipynb_checkpoints/ -CMakeCache.txt -compile_commands.json -CMakeFiles/ +build/ + results/ + saved_sims/ -nufi_poisson + +.ipynb_checkpoints/ *.ipynb + .todo-txt/ Notes/ diff --git a/CMakeLists.txt b/CMakeLists.txt index a565c27..aadbbb9 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -23,7 +23,6 @@ find_package(OpenMP REQUIRED) add_library(nufi_lib src/nufi_solver.cc src/save_results.cc - # src/blas.cc ) target_include_directories(nufi_lib PUBLIC diff --git a/Makefile b/Makefile deleted file mode 100644 index adbe8ea..0000000 --- a/Makefile +++ /dev/null @@ -1,271 +0,0 @@ -# CMAKE generated file: DO NOT EDIT! -# Generated by "Unix Makefiles" Generator, CMake Version 3.18 - -# Default target executed when no arguments are given to make. -default_target: all - -.PHONY : default_target - -# Allow only one "make -f Makefile2" at a time, but pass parallelism. -.NOTPARALLEL: - - -#============================================================================= -# Special targets provided by cmake. - -# Disable implicit rules so canonical targets will work. -.SUFFIXES: - - -# Disable VCS-based implicit rules. -% : %,v - - -# Disable VCS-based implicit rules. -% : RCS/% - - -# Disable VCS-based implicit rules. -% : RCS/%,v - - -# Disable VCS-based implicit rules. -% : SCCS/s.% - - -# Disable VCS-based implicit rules. -% : s.% - - -.SUFFIXES: .hpux_make_needs_suffix_list - - -# Command-line flag to silence nested $(MAKE). -$(VERBOSE)MAKESILENT = -s - -#Suppress display of executed commands. -$(VERBOSE).SILENT: - -# A target that is always out of date. -cmake_force: - -.PHONY : cmake_force - -#============================================================================= -# Set environment variables for the build. - -# The shell in which to execute make rules. -SHELL = /bin/sh - -# The CMake executable. -CMAKE_COMMAND = /usr/local/bin/cmake - -# The command to remove a file. -RM = /usr/local/bin/cmake -E rm -f - -# Escaping for special characters. -EQUALS = = - -# The top-level source directory on which CMake was run. -CMAKE_SOURCE_DIR = /home/vf/Thesis/dealII_NuFI/1x1v - -# The top-level build directory on which CMake was run. -CMAKE_BINARY_DIR = /home/vf/Thesis/dealII_NuFI/1x1v - -#============================================================================= -# Targets provided globally by CMake. - -# Special rule for the target rebuild_cache -rebuild_cache: - @$(CMAKE_COMMAND) -E cmake_echo_color --switch=$(COLOR) --cyan "Running CMake to regenerate build system..." - /usr/local/bin/cmake --regenerate-during-build -S$(CMAKE_SOURCE_DIR) -B$(CMAKE_BINARY_DIR) -.PHONY : rebuild_cache - -# Special rule for the target rebuild_cache -rebuild_cache/fast: rebuild_cache - -.PHONY : rebuild_cache/fast - -# Special rule for the target edit_cache -edit_cache: - @$(CMAKE_COMMAND) -E cmake_echo_color --switch=$(COLOR) --cyan "Running CMake cache editor..." - /usr/bin/ccmake -S$(CMAKE_SOURCE_DIR) -B$(CMAKE_BINARY_DIR) -.PHONY : edit_cache - -# Special rule for the target edit_cache -edit_cache/fast: edit_cache - -.PHONY : edit_cache/fast - -# The main all target -all: cmake_check_build_system - $(CMAKE_COMMAND) -E cmake_progress_start /home/vf/Thesis/dealII_NuFI/1x1v/CMakeFiles /home/vf/Thesis/dealII_NuFI/1x1v//CMakeFiles/progress.marks - $(MAKE) $(MAKESILENT) -f CMakeFiles/Makefile2 all - $(CMAKE_COMMAND) -E cmake_progress_start /home/vf/Thesis/dealII_NuFI/1x1v/CMakeFiles 0 -.PHONY : all - -# The main clean target -clean: - $(MAKE) $(MAKESILENT) -f CMakeFiles/Makefile2 clean -.PHONY : clean - -# The main clean target -clean/fast: clean - -.PHONY : clean/fast - -# Prepare targets for installation. -preinstall: all - $(MAKE) $(MAKESILENT) -f CMakeFiles/Makefile2 preinstall -.PHONY : preinstall - -# Prepare targets for installation. -preinstall/fast: - $(MAKE) $(MAKESILENT) -f CMakeFiles/Makefile2 preinstall -.PHONY : preinstall/fast - -# clear depends -depend: - $(CMAKE_COMMAND) -S$(CMAKE_SOURCE_DIR) -B$(CMAKE_BINARY_DIR) --check-build-system CMakeFiles/Makefile.cmake 1 -.PHONY : depend - -#============================================================================= -# Target rules for targets named nufi_poisson - -# Build rule for target. -nufi_poisson: cmake_check_build_system - $(MAKE) $(MAKESILENT) -f CMakeFiles/Makefile2 nufi_poisson -.PHONY : nufi_poisson - -# fast build rule for target. -nufi_poisson/fast: - $(MAKE) $(MAKESILENT) -f CMakeFiles/nufi_poisson.dir/build.make CMakeFiles/nufi_poisson.dir/build -.PHONY : nufi_poisson/fast - -#============================================================================= -# Target rules for targets named nufi_lib - -# Build rule for target. -nufi_lib: cmake_check_build_system - $(MAKE) $(MAKESILENT) -f CMakeFiles/Makefile2 nufi_lib -.PHONY : nufi_lib - -# fast build rule for target. -nufi_lib/fast: - $(MAKE) $(MAKESILENT) -f CMakeFiles/nufi_lib.dir/build.make CMakeFiles/nufi_lib.dir/build -.PHONY : nufi_lib/fast - -src/main.o: src/main.cc.o - -.PHONY : src/main.o - -# target to build an object file -src/main.cc.o: - $(MAKE) $(MAKESILENT) -f CMakeFiles/nufi_poisson.dir/build.make CMakeFiles/nufi_poisson.dir/src/main.cc.o -.PHONY : src/main.cc.o - -src/main.i: src/main.cc.i - -.PHONY : src/main.i - -# target to preprocess a source file -src/main.cc.i: - $(MAKE) $(MAKESILENT) -f CMakeFiles/nufi_poisson.dir/build.make CMakeFiles/nufi_poisson.dir/src/main.cc.i -.PHONY : src/main.cc.i - -src/main.s: src/main.cc.s - -.PHONY : src/main.s - -# target to generate assembly for a file -src/main.cc.s: - $(MAKE) $(MAKESILENT) -f CMakeFiles/nufi_poisson.dir/build.make CMakeFiles/nufi_poisson.dir/src/main.cc.s -.PHONY : src/main.cc.s - -src/nufi_solver.o: src/nufi_solver.cc.o - -.PHONY : src/nufi_solver.o - -# target to build an object file -src/nufi_solver.cc.o: - $(MAKE) $(MAKESILENT) -f CMakeFiles/nufi_lib.dir/build.make CMakeFiles/nufi_lib.dir/src/nufi_solver.cc.o -.PHONY : src/nufi_solver.cc.o - -src/nufi_solver.i: src/nufi_solver.cc.i - -.PHONY : src/nufi_solver.i - -# target to preprocess a source file -src/nufi_solver.cc.i: - $(MAKE) $(MAKESILENT) -f CMakeFiles/nufi_lib.dir/build.make CMakeFiles/nufi_lib.dir/src/nufi_solver.cc.i -.PHONY : src/nufi_solver.cc.i - -src/nufi_solver.s: src/nufi_solver.cc.s - -.PHONY : src/nufi_solver.s - -# target to generate assembly for a file -src/nufi_solver.cc.s: - $(MAKE) $(MAKESILENT) -f CMakeFiles/nufi_lib.dir/build.make CMakeFiles/nufi_lib.dir/src/nufi_solver.cc.s -.PHONY : src/nufi_solver.cc.s - -src/save_results.o: src/save_results.cc.o - -.PHONY : src/save_results.o - -# target to build an object file -src/save_results.cc.o: - $(MAKE) $(MAKESILENT) -f CMakeFiles/nufi_lib.dir/build.make CMakeFiles/nufi_lib.dir/src/save_results.cc.o -.PHONY : src/save_results.cc.o - -src/save_results.i: src/save_results.cc.i - -.PHONY : src/save_results.i - -# target to preprocess a source file -src/save_results.cc.i: - $(MAKE) $(MAKESILENT) -f CMakeFiles/nufi_lib.dir/build.make CMakeFiles/nufi_lib.dir/src/save_results.cc.i -.PHONY : src/save_results.cc.i - -src/save_results.s: src/save_results.cc.s - -.PHONY : src/save_results.s - -# target to generate assembly for a file -src/save_results.cc.s: - $(MAKE) $(MAKESILENT) -f CMakeFiles/nufi_lib.dir/build.make CMakeFiles/nufi_lib.dir/src/save_results.cc.s -.PHONY : src/save_results.cc.s - -# Help Target -help: - @echo "The following are some of the valid targets for this Makefile:" - @echo "... all (the default if no target is provided)" - @echo "... clean" - @echo "... depend" - @echo "... edit_cache" - @echo "... rebuild_cache" - @echo "... nufi_lib" - @echo "... nufi_poisson" - @echo "... src/main.o" - @echo "... src/main.i" - @echo "... src/main.s" - @echo "... src/nufi_solver.o" - @echo "... src/nufi_solver.i" - @echo "... src/nufi_solver.s" - @echo "... src/save_results.o" - @echo "... src/save_results.i" - @echo "... src/save_results.s" -.PHONY : help - - - -#============================================================================= -# Special targets to cleanup operation of make. - -# Special rule to run CMake to check the build system integrity. -# No rule that depends on this can have commands that come from listfiles -# because they might be regenerated. -cmake_check_build_system: - $(CMAKE_COMMAND) -S$(CMAKE_SOURCE_DIR) -B$(CMAKE_BINARY_DIR) --check-build-system CMakeFiles/Makefile.cmake 0 -.PHONY : cmake_check_build_system - diff --git a/cmake_install.cmake b/cmake_install.cmake deleted file mode 100644 index ad9d58c..0000000 --- a/cmake_install.cmake +++ /dev/null @@ -1,54 +0,0 @@ -# Install script for directory: /home/vf/Thesis/dealII_NuFI/1x1v - -# Set the install prefix -if(NOT DEFINED CMAKE_INSTALL_PREFIX) - set(CMAKE_INSTALL_PREFIX "/usr/local") -endif() -string(REGEX REPLACE "/$" "" CMAKE_INSTALL_PREFIX "${CMAKE_INSTALL_PREFIX}") - -# Set the install configuration name. -if(NOT DEFINED CMAKE_INSTALL_CONFIG_NAME) - if(BUILD_TYPE) - string(REGEX REPLACE "^[^A-Za-z0-9_]+" "" - CMAKE_INSTALL_CONFIG_NAME "${BUILD_TYPE}") - else() - set(CMAKE_INSTALL_CONFIG_NAME "Debug") - endif() - message(STATUS "Install configuration: \"${CMAKE_INSTALL_CONFIG_NAME}\"") -endif() - -# Set the component getting installed. -if(NOT CMAKE_INSTALL_COMPONENT) - if(COMPONENT) - message(STATUS "Install component: \"${COMPONENT}\"") - set(CMAKE_INSTALL_COMPONENT "${COMPONENT}") - else() - set(CMAKE_INSTALL_COMPONENT) - endif() -endif() - -# Install shared libraries without execute permission? -if(NOT DEFINED CMAKE_INSTALL_SO_NO_EXE) - set(CMAKE_INSTALL_SO_NO_EXE "1") -endif() - -# Is this installation the result of a crosscompile? -if(NOT DEFINED CMAKE_CROSSCOMPILING) - set(CMAKE_CROSSCOMPILING "FALSE") -endif() - -# Set default install directory permissions. -if(NOT DEFINED CMAKE_OBJDUMP) - set(CMAKE_OBJDUMP "/usr/bin/objdump") -endif() - -if(CMAKE_INSTALL_COMPONENT) - set(CMAKE_INSTALL_MANIFEST "install_manifest_${CMAKE_INSTALL_COMPONENT}.txt") -else() - set(CMAKE_INSTALL_MANIFEST "install_manifest.txt") -endif() - -string(REPLACE ";" "\n" CMAKE_INSTALL_MANIFEST_CONTENT - "${CMAKE_INSTALL_MANIFEST_FILES}") -file(WRITE "/home/vf/Thesis/dealII_NuFI/1x1v/${CMAKE_INSTALL_MANIFEST}" - "${CMAKE_INSTALL_MANIFEST_CONTENT}") diff --git a/libnufi_lib.a b/libnufi_lib.a deleted file mode 100644 index 5f3f7a0..0000000 Binary files a/libnufi_lib.a and /dev/null differ