adaptive refining online! it seems to use a single cpu at a time instead of all, need to check this

noname.gv

@@ -0,0 +1,13 @@
+digraph G {
+	graph [layout=dot rankdir=LR]
+
+// This is just an example for you to use as a template.
+// Edit as you like. Whenever you save a legal graph
+// the layout in the graphviz window will be updated.
+
+	vim [href="http://www.vim.org/"]
+	dot [href="http://www.graphviz.org/"]
+	vimdot [href="file:///usr/bin/vimdot"]
+
+	{vim dot} -> vimdot
+}

nufi/cells.h

@@ -19,14 +19,18 @@ template <int dim> struct CellInfo {
   double h;
 };
 
+template <int dim> struct CellLocation {
+  const CellInfo<dim> *info;
+  Point<dim> reference_point;
+};
+
 template <int dim> class CellLocator {
 public:
   using CellIterator = typename DoFHandler<dim>::active_cell_iterator;
 
   void rebuild(const DoFHandler<dim> &dof_handler,
                const Triangulation<dim> &triangulation);
-
-  CellIterator locate(const Point<dim> &p) const;
+  CellLocation<dim> locate(const Point<dim> &p) const;
 
 private:
   std::vector<CellInfo<dim>> cells;
@@ -58,8 +62,7 @@ void CellLocator<dim>::rebuild(const DoFHandler<dim> &dof_handler,
 }
 
 template <int dim>
-typename DoFHandler<dim>::active_cell_iterator
-CellLocator<dim>::locate(const Point<dim> &p) const {
+CellLocation<dim> CellLocator<dim>::locate(const Point<dim> &p) const {
   static_assert(dim == 1,
                 "Current CellLocator implementation only supports 1D.");
 
@@ -82,7 +85,12 @@ CellLocator<dim>::locate(const Point<dim> &p) const {
   AssertThrow(x >= it->lower[0] - 1e-12 && x <= it->upper[0] + 1e-12,
               ExcMessage("CellLocator failed to find containing cell."));
 
-  return it->cell;
+  CellLocation<dim> location;
+
+  location.info = &(*it);
+  location.reference_point[0] = (p[0] - it->lower[0]) / it->h;
+
+  return location;
 }
 
 #endif // !CELLS_H

nufi/parameters.h

@@ -24,8 +24,8 @@ constexpr double DV = std::abs(V_DOMAIN_RIGHT - V_DOMAIN_LEFT) / NV;
 
 // deal.ii options
 constexpr unsigned int GLOBAL_REFINEMENT = 6;
-constexpr unsigned int FE_DEGREE = 2;
-constexpr unsigned int CONVERGENCE_ITERATIONS = 15000;
+constexpr unsigned int FE_DEGREE = 3;
+constexpr unsigned int CONVERGENCE_ITERATIONS = 5000;
 constexpr double CONVERGENCE_LIMIT = 1e-8;
 
 constexpr double EPS = 0.01;
@@ -35,10 +35,10 @@ constexpr double F0_FACTOR = 0.39894228040143267793994; // 1/sqrt(2pi)
 // NUFI options
 constexpr double DT = 1. / 10.;
 constexpr unsigned int TMAX = 100;
-constexpr unsigned int REFINE_FREQUENCY = 5;
+constexpr unsigned int REFINE_FREQUENCY = 10;
 
 // Plotting options
-constexpr int PLOT_FREQUENCY = 5;
+constexpr int PLOT_FREQUENCY = 10;
 constexpr size_t PLOT_NX = CALC_NX;
 constexpr double PLOT_DX = LX / PLOT_NX;
 const std::string PLOT_DIR = "results/";

nufi/poisson_problem.h

@@ -132,7 +132,7 @@ void PoissonProblem<dim>::set_rhs_function(
 template <int dim>
 PoissonProblem<dim>::PoissonProblem(unsigned int degree)
     : triangulation(Triangulation<dim>::limit_level_difference_at_vertices),
-      fe(degree), dof_handler(triangulation), mapping(degree) {}
+      dof_handler(triangulation), fe(degree), mapping(degree) {}
 
 template <int dim>
 std::vector<double>
@@ -208,12 +208,14 @@ std::vector<double> PoissonProblem<dim>::eval_vector_grad(
 
   for (unsigned int p = 0; p < points.size(); ++p) {
 
-    const auto cell = cell_locator.locate(points[p]);
+    const auto cell_location = cell_locator.locate(points[p]);
 
-    cell->get_dof_values(solution, local_solution_buffer.begin(),
-                         local_solution_buffer.end());
+    cell_location.info->cell->get_dof_values(
+        solution, local_solution_buffer.begin(), local_solution_buffer.end());
 
-    evaluator->reinit(cell, ArrayView<const Point<dim>>(&points[p], 1));
+    evaluator->reinit(
+        cell_location.info->cell,
+        ArrayView<const Point<dim>>(&cell_location.reference_point, 1));
     evaluator->evaluate(local_solution_buffer, EvaluationFlags::gradients);
 
     values[p] = evaluator->get_gradient(0)[0];

src/nufi_solver.cc

@@ -206,17 +206,17 @@ void NuFISolver::run() {
               << std::endl;
 
     // START: diagnostics
-    std::cout << "cells = " << poisson.triangulation.n_active_cells()
-              << " dofs = " << poisson.dof_handler.n_dofs() << std::endl;
-    double min_h = 1e100;
-    double max_h = 0;
-
-    for (auto cell : poisson.triangulation.active_cell_iterators()) {
-      min_h = std::min(min_h, cell->diameter());
-      max_h = std::max(max_h, cell->diameter());
-    }
-
-    std::cout << "h ratio = " << max_h / min_h << std::endl;
+    std::cout << "cells = " << poisson.triangulation.n_active_cells() << "\n"
+              << " dofs = " << poisson.dof_handler.n_dofs() << "\n";
+    // double min_h = 1e100;
+    // double max_h = 0;
+    //
+    // for (auto cell : poisson.triangulation.active_cell_iterators()) {
+    //   min_h = std::min(min_h, cell->diameter());
+    //   max_h = std::max(max_h, cell->diameter());
+    // }
+    //
+    // std::cout << "h ratio = " << max_h / min_h << std::endl;
 
     // END: diagnostics
 
@@ -248,7 +248,7 @@ void NuFISolver::run() {
       poisson.coarse_and_refine_grid(it, phi_history);
       refine_time = timer.elapsed() - refine_start;
       std::cout << "Refinement step done in "
-                << std::to_string(std::floor(refine_time)) << "[s]";
+                << std::to_string(std::floor(refine_time)) << "[s]" << "\n";
     }
 
     double timer_elapsed = timer.elapsed();