diff --git a/libnufi_lib.a b/libnufi_lib.a index be1c94e..8fe5eb1 100644 Binary files a/libnufi_lib.a and b/libnufi_lib.a differ diff --git a/nufi/poisson_problem.h b/nufi/poisson_problem.h index 2e5bc28..5636692 100644 --- a/nufi/poisson_problem.h +++ b/nufi/poisson_problem.h @@ -106,6 +106,8 @@ public: private: void create_mesh(); void setup_system(); + void setup_system_in_refinement_before_interpolating(); + void setup_system_in_refinement_after_interpolating(); void assemble_system(); void solve(); @@ -337,6 +339,55 @@ template void PoissonProblem::setup_system() { // update_gradients); } +template +void PoissonProblem::setup_system_in_refinement_before_interpolating() { + dof_handler.distribute_dofs(fe); + + constraints.clear(); + + DoFTools::make_hanging_node_constraints(dof_handler, constraints); + + DoFTools::make_periodicity_constraints(dof_handler, 0, 1, 0, constraints); + + // Do NOT close the constraints yet. + // The gauge will be added after interpolation. + + solution.reinit(dof_handler.n_dofs()); + system_rhs.reinit(dof_handler.n_dofs()); + + cell_locator.rebuild(dof_handler, triangulation); +} + +template +void PoissonProblem::setup_system_in_refinement_after_interpolating() { + + // Add the gauge constraint. + types::global_dof_index gauge_dof = numbers::invalid_dof_index; + + for (types::global_dof_index i = 0; i < dof_handler.n_dofs(); ++i) { + if (!constraints.is_constrained(i)) { + gauge_dof = i; + break; + } + } + + Assert(gauge_dof != numbers::invalid_dof_index, + ExcMessage("No unconstrained DoF found for gauge fixing.")); + + constraints.add_line(gauge_dof); + constraints.set_inhomogeneity(gauge_dof, 0.0); + + constraints.close(); + + DynamicSparsityPattern dsp(dof_handler.n_dofs()); + + DoFTools::make_sparsity_pattern(dof_handler, dsp, constraints); + + sparsity_pattern.copy_from(dsp); + + system_matrix.reinit(sparsity_pattern); +} + template void PoissonProblem::assemble_system() { Assert(system_matrix.m() == dof_handler.n_dofs(), @@ -406,13 +457,12 @@ template void PoissonProblem::assemble_system() { template void PoissonProblem::coarse_and_refine_grid(size_t it) { std::cout << "Refinement Started" << "\n"; - Vector error_per_cell(triangulation.n_active_cells()); + Vector error_per_cell(triangulation.n_active_cells()); KellyErrorEstimator::estimate( dof_handler, QGauss(fe.degree + 1), std::map *>(), solution, error_per_cell); - GridRefinement::refine_and_coarsen_fixed_number(triangulation, error_per_cell, 0.3, 0.03); @@ -425,16 +475,19 @@ template void PoissonProblem::coarse_and_refine_grid(size_t it) { triangulation.execute_coarsening_and_refinement(); - setup_system(); + setup_system_in_refinement_before_interpolating(); transfer.interpolate(refined_solution, solution); + setup_system_in_refinement_after_interpolating(); + constraints.distribute(solution); std::cout << "Refinement Finished" << "\n"; std::string grid_file_name = Parameters::PLOT_DIR + "grid_" + std::to_string(it); + save_grid_to_file(grid_file_name); // std::vector Ex = // sample_electric_potential(Parameters::X_DOMAIN_LEFT, @@ -442,8 +495,6 @@ template void PoissonProblem::coarse_and_refine_grid(size_t it) { // Parameters::PLOT_NX); // // save_space_vector(Ex, "Ex_after_coarsed", it); - - save_grid_to_file(grid_file_name); } template void PoissonProblem::solve() {