mirror of
https://codeberg.org/vcbferreira/NuFI_deal.ii
synced 2026-08-12 14:33:18 +02:00
splines made but need to be checked, solver seems to make wrong results
This commit is contained in:
@@ -0,0 +1,54 @@
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#ifndef NUFI_BLAS_HPP
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#define NUFI_BLAS_HPP
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#include <cstddef>
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/*!
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* \brief Convenience wrappers for BLAS, with overloads for single and double
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* precision.
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*/
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namespace blas
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{
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double dot( const size_t n, const double *x, size_t incx,
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const double *y, size_t incy );
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float dot( const size_t n, const float *x, size_t incx,
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const float *y, size_t incy );
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void axpy( size_t n, double alpha, const double *x, size_t incx,
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double *y, size_t incy );
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void axpy( size_t n, float alpha, const float *x, size_t incx,
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float *y, size_t incy );
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void scal( size_t n, double alpha, double *x, size_t incx );
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void scal( size_t n, float alpha, float *x, size_t incx );
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void copy( size_t n, const double *x, size_t incx, double *y, size_t incy );
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void copy( size_t n, const float *x, size_t incx, float *y, size_t incy );
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void ger( const size_t M, const size_t N, const double alpha,
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const double *X, const size_t incX, const double *Y, const size_t incY,
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double *A, const size_t lda);
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void ger( const size_t M, const size_t N, const float alpha,
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const float *X, const size_t incX, const float *Y, const size_t incY,
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float *A, const size_t lda);
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void gemv( const char trans, size_t m, size_t n,
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double alpha, const double *a, size_t lda,
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const double *x, size_t incx, double beta,
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double *y, size_t incy );
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void gemv( const char trans, size_t m, size_t n,
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float alpha, const float *a, size_t lda,
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const float *x, size_t incx, float beta,
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float *y, size_t incy );
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}
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#endif
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+11
-12
@@ -4,6 +4,8 @@
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#include <cmath>
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#include <cmath>
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#include <deal.II/base/function.h>
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#include <deal.II/base/function.h>
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#include "parameters.hpp"
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#include "parameters.hpp"
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#include "splines.hpp"
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#include "lsmr.hpp"
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using namespace dealii;
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using namespace dealii;
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@@ -36,8 +38,8 @@ inline double compute_rho(const double x,
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}
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}
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template <typename real, size_t order, size_t dx = 0>
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template <size_t dx = 0>
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real eval( real x, const real *coeffs) noexcept
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double eval(double x, const double *coeffs) noexcept
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{
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{
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using std::floor;
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using std::floor;
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@@ -48,7 +50,7 @@ real eval( real x, const real *coeffs) noexcept
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x = x - Parameters::LX * floor( x/Parameters::LX );
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x = x - Parameters::LX * floor( x/Parameters::LX );
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// Knot number
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// Knot number
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real x_knot = floor( x/Parameters::SPLINE_DX);
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double x_knot = floor( x/Parameters::SPLINE_DX);
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size_t ii = static_cast<size_t>(x_knot);
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size_t ii = static_cast<size_t>(x_knot);
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@@ -56,10 +58,10 @@ real eval( real x, const real *coeffs) noexcept
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x = x/Parameters::SPLINE_DX - x_knot;
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x = x/Parameters::SPLINE_DX - x_knot;
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// Scale according to derivative.
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// Scale according to derivative.
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real factor = 1;
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double factor = 1;
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for ( size_t i = 0; i < dx; ++i ) factor *= 1/Parameters::SPLINE_DX;
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for ( size_t i = 0; i < dx; ++i ) factor *= 1/Parameters::SPLINE_DX;
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return factor*splines1d::eval<real,order,dx>( x, coeffs + ii );
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return factor*splines1d::eval<double,Parameters::SPLINE_ORDER,dx>(x, coeffs + ii);
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}
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}
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template <typename real, size_t order>
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template <typename real, size_t order>
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@@ -72,17 +74,15 @@ void interpolate( real *coeffs, const real *values) // Least Squares needs to be
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struct mat_t // STRUCT AND CONFIG NEEDS TO BE REVIEWED
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struct mat_t // STRUCT AND CONFIG NEEDS TO BE REVIEWED
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{
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{
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const config_t<real> &config;
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real N[ order ];
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real N[ order ];
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mat_t( const config_t<real> &conf ): config { conf }
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mat_t()
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{
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{
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splines1d::N<real,order>(0,N);
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splines1d::N<real,order>(0,N);
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}
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}
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void operator()( const real *in, real *out ) const
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void operator()( const real *in, real *out ) const
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{
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{
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#pragma omp parallel for
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for ( size_t i = 0; i < Parameters::SPLINE_NX; ++i )
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for ( size_t i = 0; i < Parameters::SPLINE_NX; ++i )
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{
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{
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real result = 0;
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real result = 0;
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@@ -103,10 +103,9 @@ void interpolate( real *coeffs, const real *values) // Least Squares needs to be
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struct transposed_mat_t // STRUCT AND CONFIG NEEDS TO BE REVIEWED
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struct transposed_mat_t // STRUCT AND CONFIG NEEDS TO BE REVIEWED
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{
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{
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const config_t<real> &config;
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real N[ order ];
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real N[ order ];
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transposed_mat_t( const config_t<real> &conf ): config { conf }
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transposed_mat_t()
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{
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{
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splines1d::N<real,order>(0,N);
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splines1d::N<real,order>(0,N);
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}
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}
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@@ -132,9 +131,9 @@ void interpolate( real *coeffs, const real *values) // Least Squares needs to be
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}
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}
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};
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};
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mat_t M { config }; transposed_mat_t Mt { config };
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mat_t M; transposed_mat_t Mt;
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lsmr_options<real> opt; opt.silent = true;
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lsmr_options<real> opt; opt.silent = true;
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lsmr( config.Nx, config.Nx, M, Mt, values, tmp.get(), opt );
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lsmr( Parameters::SPLINE_NX, Parameters::SPLINE_NX , M, Mt, values, tmp.get(), opt );
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if ( opt.iter == opt.max_iter )
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if ( opt.iter == opt.max_iter )
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std::cerr << "Warning. LSMR did not converge.\n";
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std::cerr << "Warning. LSMR did not converge.\n";
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@@ -0,0 +1,252 @@
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#ifndef LSMR_HPP
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#define LSMR_HPP
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#include <cmath>
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#include <limits>
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#include <iomanip>
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#include <iostream>
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#include "blas.hpp"
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template <typename real>
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struct lsmr_options
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{
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///////////
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// INPUT //
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///////////
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// Whether to print messages to std::cout.
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bool silent = true;
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// Residual of normal equations AᵀAx = Aᵀb
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bool relative_residual = true;
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real target_residual = std::numeric_limits<real>::epsilon();
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size_t max_iter = 1000;
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// How many Lánczos vectors to keep for local reorthogonalisation.
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// Choose zero for no reorthogonalisation, pure LSMR.
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// Choose a large value for complete reorthognalisation.
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//
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// In an ideal world without roundoff errors, this would have no effect
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// at all, as the Lánczos vectors would be perfectly orthogonal. In practice
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// this property is lost rather quickly. One may choose to store some of
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// the most recent Lánczos vectors to enforce this property manually. This
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// increase convergence speed at the cost of additional memory requirements.
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size_t reorthogonalise_u = 50;
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size_t reorthogonalise_v = 50;
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////////////
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// OUTPUT //
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////////////
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// Iteration count and reached residual.
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// Estimates of ‖A‖ and cond(A)
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size_t iter; real residual;
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real norm_A_estimate, cond_estimate;
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};
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template <typename real, typename mat, typename transposed_mat>
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void lsmr( size_t m, size_t n, const mat& A, const transposed_mat& At,
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const real *b, real *x, lsmr_options<real> &S );
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namespace lsmr_impl
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{
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template <typename real>
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real norm( size_t n, const real *x )
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{
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using std::hypot;
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real result = 0;
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for ( size_t i = 0; i < n; ++i )
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result = hypot(result,x[i]);
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return result;
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}
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// Reorthognalise u with respect to the previous vectors in buffer,
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// using the modified Gram–Schmidt process. Overwrite the oldest vector
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// in buffer when full.
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template <typename real>
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void reorthogonalise( real *buf, size_t n, size_t buffer_max,
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real *u, size_t iter )
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{
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using std::min;
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using blas::dot;
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using blas::axpy;
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using blas::scal;
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using blas::copy;
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size_t n_buffered = min( iter+1, buffer_max );
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for ( size_t i = 0; i < n_buffered; ++i )
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{
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real fac = -dot( n, u, 1, buf + i*n, 1 );
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axpy( n, fac, buf + i*n, 1, u, 1 );
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}
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scal( n, 1/norm(n,u), u, 1 );
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copy( n, u, 1, buf + ((iter+1)%buffer_max)*n, 1 );
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}
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}
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template <typename real, typename mat, typename transposed_mat>
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void lsmr( size_t m, size_t n, const mat& A, const transposed_mat& At,
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const real *b, real *x, lsmr_options<real> &S )
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{
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using std::min;
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using std::max;
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using std::abs;
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using std::swap;
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using std::hypot;
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using blas::axpy;
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using blas::scal;
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using blas::copy;
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using lsmr_impl::norm;
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using lsmr_impl::reorthogonalise;
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// Allocation of buffers.
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size_t max_buf = min(n,m)-1;
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S.reorthogonalise_u = min(S.reorthogonalise_u,max_buf);
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S.reorthogonalise_v = min(S.reorthogonalise_v,max_buf);
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size_t u_buffer_size = max( S.reorthogonalise_u, size_t(1) );
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size_t v_buffer_size = max( S.reorthogonalise_v, size_t(1) );
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std::unique_ptr<real[]> data { new real[ n*( 4 + v_buffer_size ) +
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m*( 2 + u_buffer_size ) ] {} };
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real *u = data.get();
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real *utmp = u + m;
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real *ubuf = utmp + m;
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real *v = ubuf + m*u_buffer_size;
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real *vtmp = v + n;
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real *h = vtmp + n;
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real *h_bar = h + n;
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real *vbuf = h_bar + n;
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At(b,v);
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const real norm_ATb = norm(n,v);
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A(x,u); axpy(m,real(-1),b,1,u,1);
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scal(m, real(-1), u, 1 ); // u = b - Ax;
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real alpha = 0;
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real beta = norm(m,u);
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if ( beta > real(0) )
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{
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scal(m, real(1)/beta, u, 1 ); // u = b - Ax / norm(b-Ax)
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At(u,v); // v = At*u
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alpha = norm(n,v);
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}
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if ( alpha > real(0) )
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scal(n, real(1)/alpha, v, 1 ); // v = At*u/norm(At*u)
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copy(n,u,1,ubuf,1); // u_buf.col(0) = u_buf
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copy(n,v,1,vbuf,1); // v_buf.col(0) = v
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copy(n,v,1,h,1); // h = v
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if ( alpha * beta == real(0) ) return;
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real alpha_bar = alpha, zeta_bar = alpha*beta;
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real rho = 1, rho_bar = 1, c_bar = 1, s_bar = 0;
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real c, s, theta, zeta, theta_bar, rho_prev, rho_bar_prev;
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// For estimating the condition number.
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real sigma_max = 0, sigma_min = std::numeric_limits<real>::max();
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real rho_bar_max = 0, rho_bar_min = std::numeric_limits<real>::max();
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S.norm_A_estimate = 0;
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for ( S.iter = 0; S.iter < S.max_iter; ++S.iter )
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{
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// Continue the bidiagonalisation.
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A(v,utmp); axpy(m,-alpha,u,1,utmp,1); swap(u,utmp); // u = A*v - alpha*u
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beta = norm(m,u);
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if ( beta > 0 )
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{
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scal(m, real(1)/beta, u, 1 );
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if ( S.reorthogonalise_u )
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reorthogonalise( ubuf, m, u_buffer_size, u, S.iter );
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S.norm_A_estimate = hypot( alpha, S.norm_A_estimate );
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S.norm_A_estimate = hypot( beta , S.norm_A_estimate );
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At(u,vtmp); axpy(n,-beta,v,1,vtmp,1); swap(v,vtmp); // v = At*u - beta*v
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alpha = norm(n,v);
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if ( alpha > 0 )
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{
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scal(n,real(1)/alpha, v, 1 );
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if ( S.reorthogonalise_v )
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reorthogonalise( vbuf, n, v_buffer_size, v, S.iter );
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}
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}
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// Construct and apply rotation P_k
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rho_prev = rho;
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rho = hypot(alpha_bar,beta);
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c = alpha_bar/rho;
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s = beta/rho;
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theta = s*alpha;
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alpha_bar = c*alpha;
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// Construct and apply rotation \bar{P}_k
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rho_bar_prev = rho_bar;
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if ( S.iter )
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{
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rho_bar_max = max( rho_bar, rho_bar_max );
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rho_bar_min = min( rho_bar, rho_bar_min );
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}
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theta_bar = s_bar*rho;
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rho_bar = hypot( c_bar*rho, theta );
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if ( S.iter )
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{
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sigma_max = max( rho_bar_max, c_bar*rho );
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sigma_min = min( rho_bar_min, c_bar*rho );
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}
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c_bar = c_bar * rho/rho_bar;
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s_bar = theta/rho_bar;
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zeta = c_bar * zeta_bar;
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zeta_bar = -s_bar*zeta_bar;
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// Update h, h_bar, x
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||||||
|
scal(n, -(theta_bar*rho)/(rho_prev*rho_bar_prev), h_bar, 1 ) ;
|
||||||
|
axpy(n, real(1), h, 1, h_bar, 1 ); // h_bar = h - factor*h_bar
|
||||||
|
|
||||||
|
axpy( n, zeta/(rho*rho_bar), h_bar, 1, x, 1 ); // x += factor * h_bar
|
||||||
|
|
||||||
|
scal(n, -theta/rho, h, 1 );
|
||||||
|
axpy(n, real(1), v, 1, h, 1 ); // h = v - factor*h;
|
||||||
|
|
||||||
|
// Estimate quantities.
|
||||||
|
if ( S.relative_residual ) S.residual = abs(zeta_bar)/norm_ATb;
|
||||||
|
else S.residual = abs(zeta_bar);
|
||||||
|
S.cond_estimate = sigma_max / sigma_min;
|
||||||
|
|
||||||
|
if ( S.residual <= S.target_residual )
|
||||||
|
{
|
||||||
|
if ( S.silent == false )
|
||||||
|
{
|
||||||
|
std::cout << "LSMR: Iteration: " << std::setw(4) << S.iter << ", "
|
||||||
|
<< "Residual: " << std::setw(12) << std::scientific << S.residual << ", "
|
||||||
|
<< "cond estimate: " << std::setw(12) << std::scientific << S.cond_estimate << ".\n";
|
||||||
|
}
|
||||||
|
return;
|
||||||
|
}
|
||||||
|
|
||||||
|
if ( S.silent == false && (S.iter%10) == 0 )
|
||||||
|
{
|
||||||
|
std::cout << "LSMR: Iteration: " << std::setw(4) << S.iter << ", "
|
||||||
|
<< "Residual: " << std::setw(12) << std::scientific << S.residual << ", "
|
||||||
|
<< "cond estimate: " << std::setw(12) << std::scientific << S.cond_estimate << ".\n";
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
#endif
|
||||||
|
|
||||||
+64
-78
@@ -8,15 +8,14 @@
|
|||||||
#include <deal.II/numerics/fe_field_function.h>
|
#include <deal.II/numerics/fe_field_function.h>
|
||||||
|
|
||||||
#include <iostream>
|
#include <iostream>
|
||||||
|
#include <memory>
|
||||||
#include <ostream>
|
#include <ostream>
|
||||||
#include <vector>
|
#include <vector>
|
||||||
#include <cstddef>
|
#include <cstddef>
|
||||||
|
|
||||||
#include "parameters.hpp"
|
#include "parameters.hpp"
|
||||||
#include "poisson_problem.hpp"
|
#include "poisson_problem.hpp"
|
||||||
#include "fields.hpp" // holds f0(x,v), and compute_rho(x)
|
#include "fields.hpp"
|
||||||
#include "spline_field.hpp" // old GPT splines
|
|
||||||
#include "splines.hpp" //new splines
|
|
||||||
|
|
||||||
using namespace dealii;
|
using namespace dealii;
|
||||||
|
|
||||||
@@ -26,15 +25,15 @@ public:
|
|||||||
NuFISolver();
|
NuFISolver();
|
||||||
|
|
||||||
void run();
|
void run();
|
||||||
double eval_rho(unsigned int n, double x, const std::vector<double> E_coeffs, unsigned int Nv = Parameters::NV);
|
double eval_rho(unsigned int n, double x, const double *E_coeffs, unsigned int Nv = Parameters::NV);
|
||||||
double eval_ftilda(unsigned int n, double x, double u, const std::vector<double> E_coeffs);
|
double eval_ftilda(unsigned int n, double x, double u, const double *E_coeffs);
|
||||||
void save_ftilda(unsigned int n, const std::vector<double> E_coeffs, unsigned int Nx_out, unsigned int Nv_out, const std::string &filename);
|
void save_ftilda(unsigned int n, const double *E_coeffs, unsigned int Nx_out, unsigned int Nv_out, const std::string &filename);
|
||||||
|
|
||||||
private:
|
private:
|
||||||
|
|
||||||
|
|
||||||
unsigned int Nt = std::floor(Parameters::TMAX/Parameters::DT);
|
unsigned int Nt = std::floor(Parameters::TMAX/Parameters::DT);
|
||||||
[[maybe_unused]] unsigned int Nx = Parameters::SPLINE_NX;
|
unsigned int Nx = Parameters::SPLINE_NX;
|
||||||
|
|
||||||
double Lx = Parameters::LX;
|
double Lx = Parameters::LX;
|
||||||
|
|
||||||
@@ -42,8 +41,6 @@ private:
|
|||||||
|
|
||||||
unsigned int order;
|
unsigned int order;
|
||||||
|
|
||||||
double dt = Parameters::DT;
|
|
||||||
|
|
||||||
PoissonProblem<1> poisson;
|
PoissonProblem<1> poisson;
|
||||||
|
|
||||||
};
|
};
|
||||||
@@ -51,72 +48,82 @@ private:
|
|||||||
inline double NuFISolver::eval_ftilda(unsigned int n,
|
inline double NuFISolver::eval_ftilda(unsigned int n,
|
||||||
double x,
|
double x,
|
||||||
double u,
|
double u,
|
||||||
const std::vector<double> E_coeffs)
|
const double *E_coeffs)
|
||||||
|
|
||||||
{
|
{
|
||||||
double Lu = std::abs(Parameters::V_DOMAIN_LEFT - Parameters::V_DOMAIN_RIGHT);
|
if ( n == 0 ) return f0(x,u);
|
||||||
|
|
||||||
if (n == 0)
|
const size_t stride_x = 1;
|
||||||
return f0(x, u);
|
const size_t stride_t = stride_x*(Parameters::SPLINE_NX + Parameters::SPLINE_ORDER - 1);
|
||||||
|
|
||||||
// Initial half-step.
|
double Ex;
|
||||||
u += 0.5*dt*E_spline.eval(x);
|
const double *c;
|
||||||
|
|
||||||
|
// We omit the initial half-step.
|
||||||
|
|
||||||
while ( --n )
|
while ( --n )
|
||||||
{
|
{
|
||||||
x -= dt*u;
|
x = x - Parameters::DT *u;
|
||||||
u += dt*E_spline.eval(x);
|
c = E_coeffs + n*stride_t;
|
||||||
|
Ex = -eval<1>(x, c);
|
||||||
|
u = u + Parameters::DT *Ex;
|
||||||
}
|
}
|
||||||
|
|
||||||
// Final half-step.
|
// The final half-step.
|
||||||
x -= dt*u;
|
x -= Parameters::DT*u;
|
||||||
u += 0.5*dt*E_spline.eval(x);
|
c = E_coeffs + n*stride_t;
|
||||||
|
Ex = -eval<1>(x, c);
|
||||||
|
u += 0.5*Parameters::DT*Ex;
|
||||||
|
|
||||||
double x_periodic = x - Lx * std::floor(x / Lx);
|
return f0(x,u);
|
||||||
double u_periodic = u - Lu * std::floor(u / Lu);
|
|
||||||
|
|
||||||
return f0(x_periodic, u_periodic);
|
|
||||||
}
|
}
|
||||||
|
|
||||||
inline double NuFISolver::eval_rho(const unsigned int n,
|
inline double NuFISolver::eval_rho(const unsigned int n,
|
||||||
const double x,
|
const double x,
|
||||||
const std::vector<double> E_coeffs,
|
const double *E_coeffs,
|
||||||
const unsigned int Nv)
|
const unsigned int Nv)
|
||||||
{
|
{
|
||||||
const double dv = (Parameters::V_DOMAIN_RIGHT - Parameters::V_DOMAIN_LEFT) / Nv;
|
const double dv = (Parameters::V_DOMAIN_RIGHT - Parameters::V_DOMAIN_LEFT) / Nv;
|
||||||
|
const double v_min = Parameters::V_DOMAIN_LEFT;
|
||||||
|
|
||||||
double integral = 0.0;
|
double integral = 0.0;
|
||||||
for (unsigned int i = 0; i < Nv; ++i)
|
for (unsigned int i = 0; i < Nv; ++i)
|
||||||
{
|
integral += eval_ftilda(n, x, v_min + i * dv, E_coeffs) * dv;
|
||||||
const double v = Parameters::V_DOMAIN_LEFT + (i + 0.5) * dv;
|
|
||||||
AssertThrow(std::isfinite(E_spline.eval(x)), ExcMessage("NaN detected in E_spline.eval(x) inside NuFISolver::eval_rho integral loop"));
|
|
||||||
integral += eval_ftilda(n, x, v, E_spline) * dv;
|
|
||||||
}
|
|
||||||
|
|
||||||
return 1.0 - integral;
|
return 1.0 - integral;
|
||||||
}
|
}
|
||||||
|
|
||||||
class ChargeDensity_NuFI : public Function<1>
|
template<unsigned int dim>
|
||||||
|
class ChargeDensity_NuFI : public Function<dim>
|
||||||
{
|
{
|
||||||
public:
|
public:
|
||||||
ChargeDensity_NuFI(NuFISolver &solver, size_t n, const std::vector<double> E_coeffs)
|
ChargeDensity_NuFI(const double *rho_values, unsigned int Nx)
|
||||||
: solver(solver), n(n), E_coeffs(E_coeffs) {}
|
: Function<dim>(), rho(rho_values), Nx(Nx) {}
|
||||||
|
|
||||||
virtual double value(const Point<1> &p,
|
virtual double value(const Point<dim> &p,
|
||||||
[[maybe_unused]] const unsigned int component = 0) const override
|
[[maybe_unused]] const unsigned int component = 0) const override
|
||||||
{
|
{
|
||||||
double x = p[0];
|
const double x = p[0];
|
||||||
|
|
||||||
return solver.eval_rho(n, x, E_coeffs);
|
// Map x -> grid index
|
||||||
|
const double L = Parameters::LX;
|
||||||
|
const double dx = L / (Nx-1);
|
||||||
|
|
||||||
|
int i = static_cast<int>(std::floor((x - Parameters::X_DOMAIN_LEFT) / dx));
|
||||||
|
|
||||||
|
// periodic wrap
|
||||||
|
i = (i % Nx + Nx) % Nx;
|
||||||
|
|
||||||
|
return rho[i];
|
||||||
}
|
}
|
||||||
|
|
||||||
private:
|
private:
|
||||||
NuFISolver &solver;
|
const double *rho;
|
||||||
size_t n;
|
const unsigned int Nx;
|
||||||
const std::vector<double> E_coeffs;
|
|
||||||
};
|
};
|
||||||
|
|
||||||
inline void NuFISolver::save_ftilda(unsigned int n,
|
inline void NuFISolver::save_ftilda(unsigned int n,
|
||||||
const std::vector<double> E_coeffs,
|
const double *E_coeffs,
|
||||||
unsigned int Nx_out,
|
unsigned int Nx_out,
|
||||||
unsigned int Nv_out,
|
unsigned int Nv_out,
|
||||||
const std::string &filename)
|
const std::string &filename)
|
||||||
@@ -144,7 +151,7 @@ inline void NuFISolver::save_ftilda(unsigned int n,
|
|||||||
{
|
{
|
||||||
double v = vmin + (j + 0.5)*dv;
|
double v = vmin + (j + 0.5)*dv;
|
||||||
|
|
||||||
double val = eval_ftilda(n, x, v, E_spline);
|
double val = eval_ftilda(n, x, v, E_coeffs);
|
||||||
|
|
||||||
file << val;
|
file << val;
|
||||||
|
|
||||||
@@ -160,60 +167,39 @@ inline void NuFISolver::save_ftilda(unsigned int n,
|
|||||||
|
|
||||||
inline void NuFISolver::run()
|
inline void NuFISolver::run()
|
||||||
{
|
{
|
||||||
std::cout << "Start of NuFISolver::run()\n\n";
|
std::cout << "Building E_sline\n\n";
|
||||||
|
|
||||||
// init E_spline
|
using std::abs;
|
||||||
|
using std::max;
|
||||||
|
|
||||||
unsigned int Nx = Parameters::SPLINE_NX;
|
const size_t stride_t = Nx + order - 1;
|
||||||
// Nx grid points
|
|
||||||
double dx = Lx / (Nx-1);
|
|
||||||
|
|
||||||
std::vector<double> E_grid(Nx);
|
std::unique_ptr<double[]> coeffs { new double[ Nt*stride_t ] {} };
|
||||||
|
std::unique_ptr<double,decltype(std::free)*> rho { reinterpret_cast<double*>(std::aligned_alloc(64,sizeof(double)*Nx)), std::free };
|
||||||
|
|
||||||
//set initial E points
|
if ( rho == nullptr ) throw std::bad_alloc {};
|
||||||
for (unsigned int i=0; i<Nx; ++i)
|
|
||||||
{
|
|
||||||
[[maybe_unused]] double x = Parameters::X_DOMAIN_LEFT + i*dx;
|
|
||||||
E_grid[i] = 0;
|
|
||||||
}
|
|
||||||
|
|
||||||
std::vector<double> E_coeffs(E_grid, Parameters::X_DOMAIN_LEFT, Parameters::X_DOMAIN_RIGHT); // Needs correction
|
|
||||||
|
|
||||||
for (unsigned int it = 0; it < Nt; ++it)
|
for (unsigned int it = 0; it < Nt; ++it)
|
||||||
{
|
{
|
||||||
std::cout << "Timestep " << it << " / " << Nt << std::endl << std::endl;
|
std::cout << "Timestep " << it << " / " << Nt << std::endl << std::endl;
|
||||||
|
|
||||||
// Step 1: Evaluate rho^n(x) using current E_spline
|
// compute rho
|
||||||
|
for(size_t i = 0; i<Nx; i++)
|
||||||
rho.resize(Nx);
|
|
||||||
|
|
||||||
for (unsigned int i = 0; i < (Nx); ++i)
|
|
||||||
{
|
{
|
||||||
double x = (i + 0.5) * dx;
|
double ith_rho = eval_rho(it, i, coeffs.get(), Parameters::NV);
|
||||||
rho[i] = eval_rho(it, x, E_spline, Parameters::NV);
|
AssertThrow(std::isfinite(ith_rho), ExcMessage("NaN detected in rho"));
|
||||||
}
|
rho.get()[i] = ith_rho;
|
||||||
|
|
||||||
ChargeDensity_NuFI rho_function(*this, it, E_spline);
|
|
||||||
|
|
||||||
poisson.set_rhs_function(rho_function);
|
|
||||||
|
|
||||||
for (unsigned int i=0; i< rho.size(); ++i) // check for bad rho[i]
|
|
||||||
{
|
|
||||||
AssertThrow(std::isfinite(rho[i]), ExcMessage("NaN detected in rho"));
|
|
||||||
}
|
}
|
||||||
|
|
||||||
|
poisson.set_rhs_function(std::make_unique<ChargeDensity_NuFI<1>>(rho.get(), Parameters::SPLINE_NX));
|
||||||
poisson.solve_step();
|
poisson.solve_step();
|
||||||
|
|
||||||
if (it % Parameters::PLOT_FREQUENCY == 0)
|
if (it % Parameters::PLOT_FREQUENCY == 0)
|
||||||
{
|
{
|
||||||
std::cout << "Saving results... \n\n";
|
std::cout << "Saving results... \n\n";
|
||||||
save_ftilda(it, E_spline, 128, 128, "results/ftilda_" + std::to_string(it) + ".dat");
|
save_ftilda(it, coeffs.get(), 128, 128, "results/ftilda_" + std::to_string(it) + ".dat");
|
||||||
poisson.output_results(it);
|
poisson.output_results(it);
|
||||||
}
|
}
|
||||||
|
|
||||||
E_grid = poisson.sample_electric_field(poisson, Nx, 0.0, Lx);
|
|
||||||
|
|
||||||
E_spline = std::vector<double> E_coeffs; // needs correction
|
|
||||||
}
|
}
|
||||||
|
|
||||||
std::cout << "NuFI simulation finished.\n";
|
std::cout << "NuFI simulation finished.\n";
|
||||||
|
|||||||
@@ -3,6 +3,7 @@
|
|||||||
|
|
||||||
#include <cmath>
|
#include <cmath>
|
||||||
#include <cstdlib>
|
#include <cstdlib>
|
||||||
|
|
||||||
namespace Parameters
|
namespace Parameters
|
||||||
{
|
{
|
||||||
constexpr unsigned int DIMENSION = 1;
|
constexpr unsigned int DIMENSION = 1;
|
||||||
@@ -27,9 +28,11 @@ namespace Parameters
|
|||||||
constexpr double DT=1./16.;
|
constexpr double DT=1./16.;
|
||||||
constexpr unsigned int TMAX = 10;
|
constexpr unsigned int TMAX = 10;
|
||||||
|
|
||||||
|
|
||||||
//spline options
|
//spline options
|
||||||
constexpr int SPLINE_NX = 512;
|
constexpr int SPLINE_NX = 512;
|
||||||
constexpr double SPLINE_DX = LX/SPLINE_NX;
|
constexpr double SPLINE_DX = LX/SPLINE_NX;
|
||||||
|
constexpr size_t SPLINE_ORDER = 4;
|
||||||
|
|
||||||
//Plotting options
|
//Plotting options
|
||||||
constexpr int PLOT_FREQUENCY = 2;
|
constexpr int PLOT_FREQUENCY = 2;
|
||||||
|
|||||||
+6
-7
@@ -33,7 +33,9 @@
|
|||||||
#include <deal.II/numerics/vector_tools.h>
|
#include <deal.II/numerics/vector_tools.h>
|
||||||
#include <deal.II/numerics/fe_field_function.h>
|
#include <deal.II/numerics/fe_field_function.h>
|
||||||
|
|
||||||
|
#include <memory>
|
||||||
#include <string>
|
#include <string>
|
||||||
|
#include <utility>
|
||||||
#include <vector>
|
#include <vector>
|
||||||
|
|
||||||
#include "parameters.hpp"
|
#include "parameters.hpp"
|
||||||
@@ -53,7 +55,7 @@ public:
|
|||||||
void solve_step();
|
void solve_step();
|
||||||
void run();
|
void run();
|
||||||
|
|
||||||
void set_rhs_function(const Function<dim> &rhs);
|
void set_rhs_function(std::unique_ptr<Function<dim>> rhs_function);
|
||||||
|
|
||||||
const Vector<double> &get_solution() const { return solution; }
|
const Vector<double> &get_solution() const { return solution; }
|
||||||
const DoFHandler<dim> &get_dof_handler() const { return dof_handler; }
|
const DoFHandler<dim> &get_dof_handler() const { return dof_handler; }
|
||||||
@@ -83,7 +85,7 @@ private:
|
|||||||
Vector<double> solution; // phi
|
Vector<double> solution; // phi
|
||||||
Vector<double> system_rhs;
|
Vector<double> system_rhs;
|
||||||
|
|
||||||
const Function<dim> *rhs_function;
|
std::unique_ptr<const Function<dim>> rhs_function;
|
||||||
|
|
||||||
MappingQ<dim> mapping;
|
MappingQ<dim> mapping;
|
||||||
};
|
};
|
||||||
@@ -91,9 +93,9 @@ private:
|
|||||||
// Utilities
|
// Utilities
|
||||||
|
|
||||||
template <int dim>
|
template <int dim>
|
||||||
void PoissonProblem<dim>::set_rhs_function(const Function<dim> &rhs)
|
void PoissonProblem<dim>::set_rhs_function(std::unique_ptr<Function<dim>> rhs)
|
||||||
{
|
{
|
||||||
rhs_function = &rhs;
|
rhs_function = std::move(rhs);
|
||||||
}
|
}
|
||||||
|
|
||||||
template <int dim>
|
template <int dim>
|
||||||
@@ -214,9 +216,6 @@ public:
|
|||||||
}
|
}
|
||||||
};
|
};
|
||||||
|
|
||||||
|
|
||||||
// =-=-=-=-= Poisson equation solver =-=-=-=-=
|
|
||||||
|
|
||||||
template <int dim>
|
template <int dim>
|
||||||
void PoissonProblem<dim>::assemble_system()
|
void PoissonProblem<dim>::assemble_system()
|
||||||
{
|
{
|
||||||
|
|||||||
Reference in New Issue
Block a user