NuFI_deal.ii/src/nufi_solver.cc

#include "nufi/nufi_solver.h"

#include <algorithm>
#include <boost/qvm/mat_access.hpp>
#include <cmath>
#include <cstdlib>
#include <deal.II/base/point.h>
#include <deal.II/base/tensor.h>
#include <deal.II/numerics/vector_tools.h>

#include <cstddef>
#include <iostream>
#include <memory>
#include <ostream>
#include <vector>

#include "nufi/fields.h"
#include "nufi/parameters.h"
#include "nufi/poisson_problem.h"
#include "nufi/save_results.h"
#include "nufi/stopwatch.h"

using namespace dealii;

double
NuFISolver::eval_ftilda(unsigned int n, double x, double u,
                        const PoissonProblem<1> &poisson,
                        const std::vector<Vector<double>> &phi_history) const {
  if (n == 0)
    return f0(x, u);

  double Ex;

  // We omit the initial half-step.

  while (--n) {
    x = x - Parameters::DT * u;
    Ex = -eval(x, poisson, phi_history[n]);
    u = u + Parameters::DT * Ex;
  }

  // The final half-step.
  x = x - Parameters::DT * u;
  Ex = -eval(x, poisson, phi_history[n]);
  u += 0.5 * Parameters::DT * Ex;

  return f0(x, u);
}

double
NuFISolver::eval_f(unsigned int n, double x, double u,
                   const PoissonProblem<1> &poisson,
                   const std::vector<Vector<double>> &phi_history) const {
  if (n == 0)
    return f0(x, u);

  double Ex;

  // Initial half-step.
  Ex = -eval(x, poisson, phi_history[n]);
  u += 0.5 * Parameters::DT * Ex;

  while (--n) {
    x = x - Parameters::DT * u;
    Ex = -eval(x, poisson, phi_history[n]);
    u = u + Parameters::DT * Ex;
  }

  // The final half-step.
  x = x - Parameters::DT * u;
  Ex = -eval(x, poisson, phi_history[n]);
  u += 0.5 * Parameters::DT * Ex;

  return f0(x, u);
}

double NuFISolver::eval_rho(unsigned int n, const double x,
                            const PoissonProblem<1> &poisson,
                            const std::vector<Vector<double>> &phi_history,
                            const unsigned int Nv) const {
  const double dv =
      (Parameters::V_DOMAIN_RIGHT - Parameters::V_DOMAIN_LEFT) / Nv;
  const double v_min = Parameters::V_DOMAIN_LEFT + 0.5 * dv;

  double integral = 0.0;

#pragma omp parallel for reduction(+ : integral)
  for (unsigned int i = 0; i < Nv; ++i)
    integral += eval_ftilda(n, x, v_min + i * dv, poisson, phi_history);
  return 1.0 - integral * dv;
}

void NuFISolver::run() {
  std::cout << "Building E_sline\n\n";

  using std::abs;
  using std::max;

  std::unique_ptr<double, decltype(std::free) *> rho{
      reinterpret_cast<double *>(std::aligned_alloc(64, sizeof(double) * Nx)),
      std::free};

  std::vector<double> int_E_squared;
  int_E_squared.reserve(Nt);

  std::vector<Vector<double>> phi_history;

  if (rho == nullptr)
    throw std::bad_alloc{};

  double total_time = 0;
  std::ofstream time_file("results/simulation_time.txt");
  time_file << "# it step_time total_time" << "\n";

  const double x_min = Parameters::X_DOMAIN_LEFT;
  double dx = Parameters::CALC_DX;

  for (unsigned int it = 0; it < Nt; ++it) {
    stopwatch<double> timer;

    double time_elapsed_before = timer.elapsed();

    std::cout << "Timestep " << it << " / " << Nt
              << " (simulation time = " << it * Parameters::DT << ")"
              << std::endl;

    // compute rho

#pragma omp parallel for
    for (size_t i = 0; i < Nx; i++) {
      double x = Parameters::X_DOMAIN_LEFT + i * dx;
      double ith_rho = eval_rho(it, x, poisson, phi_history, Parameters::NV);

      AssertThrow(std::isfinite(ith_rho), ExcMessage("NaN detected in rho"));
      rho.get()[i] = ith_rho;
    }

    poisson.set_rhs_function([&rho, x_min, dx, Nx = Nx](const Point<1> &p) {
      double x = p[0];
      int i = static_cast<int>(std::floor((x - x_min) / dx));
      i = (i % Nx + Nx) % Nx;
      return rho.get()[i];
    });

    poisson.solve_step();

    phi_history.push_back(poisson.get_solution());

    // std::vector<double> sampled_potential =
    //     poisson.sample_electric_potential(x_min, x_max, Nx); // Solution of
    //     FE

    double timer_elapsed = timer.elapsed();
    double step_time = timer_elapsed - time_elapsed_before;
    total_time += timer_elapsed;

    time_file << it << " " << step_time << " " << total_time << "\n";
    time_file.flush();

    std::cout << "step made in " << step_time << " seconds\n\n";
    if (it % Parameters::PLOT_FREQUENCY == 0) {
      std::cout << "Saving results...   ";
      save_f(*this, it, poisson, phi_history, Parameters::PLOT_NX,
             Parameters::NV, "results/ftilda_" + std::to_string(it) + ".dat");
      save_rho(*this, it, poisson, phi_history, Parameters::PLOT_NX,
               "results/rho_" + std::to_string(it) + ".dat");
      // save_Efield(it, coeffs.get(), 128, "results/field_" +
      // std::to_string(it) + ".dat");

      std::vector<double> E_x(Nx, 0.0);
#pragma omp parallel for
      for (size_t ix = 0; ix < Nx; ++ix) {
        E_x[ix] = -eval(x_min + ix * dx, poisson, phi_history[it]);
      }

      save_space_vector(E_x, "field", it);

      double int_val =
          0.5 * integral_space_vector_squared(poisson, phi_history[it]);
      int_E_squared.push_back(int_val);
      save_space_vector(int_E_squared, "electricint", it);
      std::cout << "Time since start = " << total_time << "\n\n";
    }
  }

  std::cout << "NuFI simulation finished in " << total_time << " seconds.\n";
}

NuFISolver::NuFISolver() : order(Parameters::FE_DEGREE), poisson(order) {
  std::cout << "Initializing dealii Poisson Solver\n";
  poisson.initialize();
}